Yuzu Thumbprint Cookies Recipe (Easy And Delicious)
These yuzu thumbprint cookies are a perfect blend of citrus and sweetness. Almond flour adds a nice crumbly cookie texture, but feel free to substitute more all-purpose flour instead. Disclaimer: This post may contain affiliate links.

Yuzu is hands down my favorite citrus. It’s SUPER tart but with much stronger floral notes than lemon. I actually just got my hands on a sudachi hybrid yuzu tree that I planted in my front yard. If I manage to keep it alive, you’ll be seeing lots more yuzu recipes from me!
I thought yuzu would be a fun flavor to substitute in a classic thumbprint cookie recipe. Usually, thumbprint cookies are filled with jam, which, honestly, always tastes too sweet to me. The sharp tartness of yuzu really balances out the flavor better. For this recipe, you will need to use my homemade yuzu curd, so go make that ahead of time if you can. If you’re in a pinch, you can use store-bought lemon curd instead, but I highly recommend trying the yuzu curd at least once!
How to Bake with Yuzu
Yuzu is perfect for baking as its super strong flavor survives the heat of the oven better than lemon juice. This is fortunate because fresh yuzu is hard to find in America, so using yuzu zest might be impossible. Thankfully, because yuzu juice is strong in flavor, you don’t need much in baking. For this recipe in particular, you don’t even need to add yuzu to the cookie dough. All the flavor comes in the yuzu curd in the center of the thumbprint cookie.

Where to Find Yuzu Juice
In order to make the yuzu curd, you’ll need a strong yuzu juice. If you’re fortunate enough to have fresh yuzu, you can use that, but a fair warning: fresh yuzu is notoriously NOT juicy. It may take you quite a few fruits to get enough juice. Instead I usually use bottled yuzu juice, which you can find at Japanese grocery stores or online.
The tricky part about bottled yuzu juice is that different brands will vary wildly in how tart their juice is. Some brands use a concentrate, which may or may not be diluted with water to get back to a standard juice flavor. Other brands use a “second press,” which will be much more diluted. The only way to really know what you’re dealing with is to taste the juice first. Aim for something a little more tart than lemon. If you find that you’ve accidentally bought a more diluted mixture, you can always add some lemon juice to sour it back up.

If you would rather not play trial and error in yuzu juices, my favorite is the Yuzu Co brand of juice, which is sold on Amazon. It is, however, very pricy. A good alternative is the Shirakiku yuzu extract. Although it’s called “extract,” the ingredients list only yuzu juice and the label says 100% yuzu juice. I actually typically dilute the Shirakiku even further, as it is very tart.
Thumbprint Cookie Dough with Almond Flour
My thumbprint cookies are slightly different from other recipes in that I include almond flour in my dough. I just really like the crumbly texture and tenderness that almond flour adds. This does mean that the dough is less smooth than you may have seen in other thumbprint cookies, and may have some cracks after baking. However, it also means that this dough is less likely to spread. Although I recommend chilling the dough before baking to be extra sure, I’ll be honest and say that I have skipped this step on cold days, and it’s turned out fine.

If you’re allergic to nuts or just don’t want to deal with almond flour, you can substitute more all purpose flour instead, but be really sure to chill the dough, as this version spreads more easily.
Tips for Thumbprint Cookie Dough
My thumbprint cookie dough is similar to some of my roll-out shortbread cookie recipes. Like with any cookies, you’ll want to make sure you start with softened butter that’s not too soft and melty. Melted butter = more spreading.
Also make sure to properly cream your butter and sugar. Your mixture should be visibly different in color and texture from what you started with, very light and fluffy like frosting.
Because my cookie dough is more crumbly from the almond flour, you can expect a few cracks after baking. If you’d like to hide those cracks a little more, you can roll your cookies in granulated sugar prior to filling and baking.

The key to this recipe is really to prevent your cookies spreading. Try your best to keep your kitchen cool and not work your dough too much in your hands to prevent melting the butter. I also recommend chilling the dough for at least 20 minutes in the fridge prior to baking.
Did you know your baking pans can also effect the spread of your cookies? Dark pans will brown your cookies a lot more, so I recommend light colored ones without deep sides. If you place your dough close to a raised edge of a tray, it will be more likely to spread as they are getting heat from the sides of the baking pan. I also recommend using parchment paper to line your trays for best results, but you can probably get away with using silicone mats just fine.

Yuzu Curd
This entire recipe really depends on my homemade yuzu curd. I know, I know, I hate when recipes require you to actually make a whole OTHER recipe first. But it’s so worth it! It’s SO GOOD. Plus, you’ll have a lot of yuzu curd leftover to eat with scones, toast, whatever you like.

If you really really really insist on not making yuzu curd, there are some yuzu spreads you can buy. Kuze Fuku & Sons has one that is more like a yuzu marmalade and doesn’t spread as nicely as the curd, but they generally have very good quality products. They’re also expensive! Really, just make the curd.
Obviously, you could also substitute other fillings like strawberry jam or raspberry jam to get a more standard thumbprint cookie. But that’s not why you’re here. Perhaps try my homemade Okinawan sweet potato jam instead?
More Asian Recipes
If you like this yuzu fusion cookie, check out my other Asian-flavored desserts:
- Easy Yuzu Shortbread Bars
- Matcha Crinkle Cookies
- Purple Sweet Potato Linzer Cookies
- Soft Matcha Almond Cookies
- Ube Crinkle Cookies
- Easy Yuzu Pie Bars

Yuzu Thumbprint Cookies
Ingredients
- 1/2 cup softened unsalted butter (one stick), 113g
- 1/2 cup granulated sugar, 100g
- 1/4 tsp kosher salt
- 1 egg yolk, see note
- 1/8 tsp almond extract
- 1 cup all purpose flour, 125g
- 1/4 cup almond flour, 25g, see notes
- 5 tsp yuzu curd, see notes
Equipment
- Electric mixer
Instructions
- Preheat oven to 350 degrees F and line two baking sheets with parchment paper or a silicone mat.
- With an electric or stand mixer, cream butter with sugar and salt until light and fluffy.
- Add egg yolk and almond extract and beat until homogenous.
- Add all purpose flour and almond flour and gently mix until mixture comes together in a dough.
- Use a two tbsp cookie scoop or other spoon to roll small cookie dough balls and place on your prepared baking sheets.
- Gently press the back of a 1/2 teaspoon measuring spoon to create small craters in the middle of each cookie.
- Scoop a rounded 1/4 teaspoon of yuzu curd into each crater.
- Chill cookies in the fridge for 20 minutes (see notes about whether you want to risk skipping this step).
- Bake for 12-15 minutes, or until bottom of the cookie becomes lightly browned. Because of the curd, I keep these cookies in an airtight container in the fridge if not being eaten the day of baking. Allow cookies to come to room temperature before eating.
Notes
- If doubling this recipe, you can use one whole egg instead of two egg yolks.
- If you don’t want to use my homemade yuzu curd recipe, feel free to substitute lemon curd.
- You can substitute more all purpose flour for the almond flour if you wish. Almond flour gives the dough a more crumbly texture and prevents spreading. When I’ve made this recipe with almond flour, I have sometimes skipped chilling the dough. When I’ve made this recipe with all all-purpose flour, the cookies spread if the dough wasn’t chilled.
- If your kitchen is very warm or your butter was overly soft, you may need to chill the dough regardless of what flour you use.
Hi! I think the measurement for the scoop is wrong, when I made this and scooped 2 tbsps of the dough, I was only able to make 9 balls and then the cookies were a bit big.
But otherwise, this recipe is really good! And I really love the yuzu curd recipe! 😊♥️
Hi! Thanks for the review! When you measured the dough, did you use a measuring spoon and scoop the dough flush to the rim so the top was flat? If you scooped spheres, then you doubled the volume and probably did 4 tbsp per cookie, which is why you only got half as much. That would be my guess!
I used a 1 tbsp meauring spoon, and scooped 2 times per cookie, since you indicated 2 tbsps per cookie. And I only got 9 cookies out of it. 😄
Hi! These cookies were delicious and had a great crispness. My cookies spread despite putting them in the fridge for 20min. I did double the recipe and used 1 whole egg. Should I increase the almond meal to flour ratio next time?
Hi Minerva, it could just need a little more chilling time depending on how hot your kitchen is and how long it took you to make the double batch. Another factor could be whether you measure by weight or by volume (I actually find that by volume there’s less spreading as there’s a tendency to accidentally add more flour than by weight). I would guess that if you increase the almond to flour ratio it would definitely help with the spreading regardless of other factors!
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The yuzu curd is indeed delicious, and I got a bunch of batches of this cookie from 1 batch of yuzu curd. The cookies also come out great every time, super straightforward and high impression to effort ratio for parties.
However, I would love it if you can link the yuzu curd recipe directly on this page – I may have missed it after scrolling back and forth on my phone, but I’m not seeing it and I really had to dig to find it again on your website as I did not bookmark the page the first time I used the recipe. Just a thought.
Hi Tracy, I definitely thought I had already linked the yuzu curd recipe, so thank you for pointing that out to me. I just updated the page, and it should now be linked in the recipe card for convenience.
I haven’t tried the recipe yet but I’m SO excited to – I do have an allergy to almonds however. Is there any sort of substitute for the almond extract?
You can use vanilla extract instead!
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Hi! Does one recipe yield 12 or 18 cookies? Above says 18 but from the comments it looks like 12. Thanks!